Time allowed: 3 hours
Maximum Marks: 70
1. Name any two scientists involved in designing the first recombinant DNA molecule.
Ans: Paul Berg, Herbert Boyer, Annie Chang, and Stanley Cohen.
2. Write any two properties which can be improved through protein engineering.
Ans: Properties for thermal and pH stability/ solvent tolerance, and solubility/ catalytic potency, etc.
3. Transgenic plants have been developed to survive in a saline habitat. Which technique might have been used to develop such plants?
Ans: By the production of stress-related osmolytes like sugars (e.g. trihalose and fructans)/ sugar alcohols (e.g. mannitol) / amino acids (e.g. proline), glycine betaine/ certain proteins (e.g. antifreeze proteins).
4. Which vector was used in the first cloning experiment involving a mammalian cell?
Ans: Simian Virus 40
OR
How does a modification enzyme protect its own DNA from digestion?
Ans: Methylation
5. What was the strategy behind the Human Genome Project? 1
Ans: To make a series of maps of each human chromosome at increasingly finer resolutions.
6. An enriched medium containing salts, glucose, proteins, and vitamins was made, and a commercially available animal cell line was introduced. However, the cells began dying. What could be the reason behind it?
Ans: Serum/FCS, an essential component of animal cell culture media, was missing.
OR
What is A in the flow chart?
Ans: Trophoblast
7. Margaret Dayhoff observed that protein sequences undergo variation according to certain patterns. Write any one such pattern.
Ans: Amino acids were not replaced at random but were altered with specific preferences./ Some amino acids such as tryptophan, was generally not replaced by any other amino acid / Based on several homologous sequences, a point accepted mutation (PAM) matrix could be developed.
OR
What is the underlying principle of “Molecular evolution”?
Ans: Functionally related or homologous protein sequences are similar.
8. Crystallisation is not required due to the advent of which of the following new technique?
9. Optimum pH for plant tissue culture medium is-
10. The single-letter codes for Tyrosine and Asparagine are
11. The disease due to the deficiency of the enzyme Adenosine Deaminase (ADA) is
Ans:
12. Question numbers 12(i) to 12(iv) are based on the following text on characterization of Cell Lines:
In order to analyze the growth characteristics of a particular cell type or cell line, a growth curve can be established from which one can obtain a population doubling time, a lag time, and a saturation density. A growth curve generally will show the cell population’s lag phase, that is, the time it takes for the cells to recover from subculture, attach, and spread; the log phase, in which the cell number begins to increase exponentially and a plateau phase, in which the growth rate slows or stops due to depletion of growth factors and nutrients.
(i). Beyond what cell concentration, saturation density is achieved?
(ii). There is no increase in the cell concentration in the lag phase due to the following reasons:
(iii). In which phase of growth is the specific growth rate of animal cell calculated?
(iv) A student adds antibiotic to the animal cell culture medium and still obtains the same growth curve. The probable explanation for it will be:
13. Differentiate between synthetic and complex medium used for microbial culture. 2
Ans: Synthetic media – Full composition of the medium is known.
Semi-synthetic media – These media contain highly complex components such as peptone, beef extract, yeast extract or casein digest.
Nutrient broth/ Typticase soya broth (TSB) / Brain heart infusion (BHI) broth.
14. How can LEU 2 gene be used as a selectable marker? 2
Ans: LEU2 gene codes for an enzyme required for the synthesis of amino acid leucine.
Yeast cells having this plasmid can grow on a medium lacking leucine and hence can be selected.
e.g. Yep
15. On the basis of the table given below, state your observations pertaining to the organisation features of the organism.
| ORGANISM | No. of chromosomes | Genome size inbase pairs | The number ofpredicted genes | Part of thegenome thatencodes forproteins |
| Worm: Caenorhabditiselegans | 6 | 100,000,000 | 19,000 | 27% |
| Human: Homo sapiens | 23 | 3,000,000,000 | 20,000-25,000 | <5% |
| Fly Drosophilamelanogaster | 4 | 175,000,000-196,000,000 | 13600 | 20% |
Ans: No simple correlation between the intuitive complexity of an organism and the number of genes in its genome.
A relatively small number of genes in a human genome in comparison to worm /Drosophila melanogaster.
16. Differentiate between somaclones and gametoclones. Who proposed the term somaclones?
Ans: While somaclones are plant variants obtained from tissue cultures of somatic tissues, gametoclones are plant variants with gametophytic origin obtained from tissue such as pollen or egg cell.
Larkin and Scowcroft (1981) proposed the term ‘somaclones’
17 a) What are the various interactions that stabilize a folded protein?
b) How can the stability of a protein be changed?
Ans: A balance between the stabilizing (mainly hydrophobic) interactions and destabilization interactions.
By substituting amino acids that either favour stabilizing interactions in a folded protein or destabilizing interactions in an inactive protein.
18. What are the various biosafety issues in microbial technology?
Ans: Potential of genetically modified organisms (GMO) or recombinant strains to infect other organisms./Toxicity and allergy associated with the use of recombinant molecules./ Increasing the environmental pool of antibiotic-resistant microorganisms or transfer of antibiotic-resistant genes./Problems associated with the disposal of spent microbial biomass./Safety aspects associated with contamination, infection, or mutation of process strains.
OR
The laboratory scale design cannot be scaled up to an industrial scale directly. Write any two points that need to be considered while going for industrial-scale production.
Ans: Bulk purchase of chemicals and other raw materials would bring down costs.
• The labour cost decreases sharply with an increase in production.
19. In a variant of chymotrypsin, Asp 102 is replaced by Glu 102. Do you expect the enzyme to retain activity? Schematically indicate the role of amino acid residues participating in catalysis.
Ans:
OR
Thalassemic patients produce excess alpha or beta subunits of haemoglobin leading to impaired oxygen-binding capacity by their erythrocytes. How can it be determined as to which subunit is produced in excess?
Ans: Normal and thalassemic erythrocytes were obtained and their lysates analysed. Protein fingerprinting/ 2-D gel electrophoresis/ MALDI/ SDS-PAGE can identify if the alpha or beta chain is absent
Protein fingerprinting:
20. Recombinant insulin is produced at 100 mg/l by E. coli at a cell concentration of 1g/l. Calculate the volume of the reactor (size of the fermentor) needed to produce 1 kilogram of insulin in the following conditions:
Ans: (a) Insulin production is 100 mg/L; so fermentor volume needed for 1 Kg of insulin is 1 Kg /100mg = 1000, 000mg/100,g = 10,000mg = 10,000L.
(b) Cell concentration is increased 50 times, we need 200 L reactor.
(c) Insulin yield per litre of culture is 500 X 50 = 25, 000 mg / L which is 25gram/L. We need a 40 L reactor (1000g/25g) .
21. Schematically explain the formation of a recombinant plasmid.
Ans:
OR
Students of Class XII visited Microbial Type Culture Collection, Chandigarh and observed microbial cultures of Providencia stuartii, Streptomyces albus and Haemophilus aegyptus. Name the restriction enzymes obtained from them and also specify their restriction sites.
Ans:
Haemophilus aegyptus HaeIII 5’G-G-C-C 3’
3’C-C-G-G 5’
Providencia stuartii PstI 5’C-T-G-C-A-G 3’
3’G-A-C-G-T-C 5’
Streptomyces albus SalI 5’G-T-C-G-A-C 3’
3’C-A-G-C-T-G 5′
22. Complete the table by filling in the mode of action / functional properties indicated as A, B, C, D, E, and F.
| Functional Property | Mode of action |
| Whipping/Foaming | A |
| B | Formation and stabilization of fat emulsions |
| C | Protein matrix formation and setting |
| Viscosity | D |
| E | Hydrogen bonding of water; entrapment of water |
| Solubility | F |
Ans:
23. Selection is an important step in genetic engineering. You are given ampicillin and tetracycline antibiotics. Using these antibiotics, which selection technique could be used to differentiate between recombinant and non-recombinant cells?
Ans: Replica plating.
24. Write any six applications of plant genetic engineering. 3
Ans: Production of healthy oils with altered fatty acid profiles.
25. How does the metagenomics approach help to identify novel genes present in the environment? Explain the process.
Ans: The collective DNA(from various environmental niche) is subjected to restriction digestion using restriction endonucleases and the fragments are cloned into suitable vectors.
OR
What is a pilot plant? Why is it necessary to validate a process in a pilot plant before commercial-scale production in a bioprocess industry?
Ans: Pilot plant: Mini version of the commercial plant.
Direct production of microbes on a large or commercial scale has the risk of not only large investments, but also producing products, which may not be of appropriate quality so that there are problems in their commercialization.
26. Given below are few transgenic crops approved by US Food and Drug Administration along with the improved character. Name the genes A to F introduced for the improved character.
| Crop | Gene | Improved character |
| Canola | A | Hybrid production |
| Corn | B | Insect resistance |
| Cotton | C | Insect resistance |
| Papaya | D | Virus resistance |
| Potato | E | Insect and virus control |
| Soyabean | F | Weed Control |
Ans:
27. Mutation is an alteration in any of the base of a DNA sequence sometimes leading to a defective protein or prematurely terminated non-functional protein. It can be spontaneous or induced. Diagrammatically explain how mutation can be induced in a gene.
Ans:
OR
A bacteriophage is known to infect E.coli with pili. How can it be modified to serve as a suitable vector? What are the major advantages of developing vectors based on such bacteriophages?
Ans: Foreign DNA can be inserted into the bacteriophage single-stranded, circular DNA of 6407 bp without disrupting any of the essential genes.
28. Explain the non-covalent interactions involved in organizing the structure of protein molecules.
Ans: Ionic bonds:
Interactions between the oppositely charged groups are also known as salt bridges
29. Which two main methodologies are used for genome sequencing? Explain.
Ans: Directed sequencing of Bacterial Artificial Chromosome (BAC) contigs
Random shotgun sequencing
OR
Explain the diseases caused by single gene mutations following Mendelian inheritance, specifying the genomic location, inheritance pattern, and mutation. Name any two diseases showing gene polymorphism with complex inheritance.
Ans: Cystic Fibrosis (Cystic Fibrosis Trans membrane Conductance Regulator CFTR gene)
Huntington disease (Huntington’s gene HTT)
Two diseases showing gene polymorphism with complex inheritance
30. Diagrammatically show the cultivation of adult stem cells from bone marrow and their differentiation into specialized cells. Name two scientists who established the field of stem cell research. For which medical conditions, stem cells can be used (Write any two)?
Ans: Cultivation of adult stem cells from bone marrow and their differentiation into specialized cells.
Ernest McCulloch and James Till: Leukemia (Cancerous blood cells), Heart disease, heart attack (cardiac tissue damage). Paralysis (spinal cord injury). Alzheimer’s, Parkinson’s, Huntington’s (dead brain cells).and Burns (damaged skin cells).
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